Liang Ma,Yihan Lin*.Orthogonal RNA replication enables directed evolution and Darwinian adaptation in mammalian cells.Nature Chemical Biology, 2025, 21, 451-463.
Liang Ma*, Yuan Lin*, Siyu Ma, Kai Chen, Yihan Lin*, Engineering virus-like particles for safe and versatile modeling of SARS-CoV-2 host interaction and immune escape, Communications Biology, 2025, 8:1322
Yongjie Lin, Xiangru Chen, Long Wu, Yutong Zhou, Yihan Lin*, Widespread transcriptional memory shapes heritable states and functional heterogeneity in cancer and stem cells, bioRxiv, 2025 doi:10.1101/2025.08.21.671653
Jiaxing Lin, Shan Jiang, Baoqiang Chen, Yiqing Du, Caipeng Qin, Yuxuan Song, Yun Peng, Mengting Ding, Jilin Wu, Yihan Lin*, Tao Xu*, Tertiary lymphoid structures are linked to enhanced antitumor immunity and better prognosis in muscle-invasive bladder cancer, Advanced Science, 2024, 2410998
Yutong Zhou, Shuyang Hou, Xinhao Miao, Guanxin Zhang, Zining Li, Di Zhang, Yongjie Lin, Yihan Lin*,Decoding cell fate: integrated experimental and computational analysis at the single-cell level, Bioinformatics,2025,41(11),btaf603
宋成治，林一瀚*，AI+定向进化赋能蛋白改造及优化，Synthetic Biology Journal，2025,6（3），doi：12211/2096-8280.2025-044
Liang Ma, Yihan Lin*, Orthogonal RNA replication enables directed evolution and Darwinian adaptation in mammalian cells, Nature Chemical Biology，21,pages451–463 (2025).
Shenqi Fan, Liang Ma, Chengzhi Song, Xu Han, Bijunyao Zhong,Yihan Lin*，Promoter DNA methylation and transcription factor condensation are linked to transcriptional memory in mammalian cells，Cell Systems，2024，15, 808–823.
Lingfeng Xue, Yan Wu，Yihan Lin*. Dissecting and improving gene regulatory network inference using single-cell transcriptome data.Genome Research, 2023, doi:10.1101/gr.277488.122.
Jianhan Zhang, Xu Han, Liang Ma, Shuhui Xu,Yihan Lin*. Deciphering a global source of non-genetic heterogeneity in cancer cells. Nucleic Acids Research, 2023, gkad666.
Wen Huang, Wei Lin, Baoqiang Chen, Jianhan Zhang, Peifen Gao, Yingying Fan,Yihan Lin*, Ping Wei*, NFAT and NF-κB dynamically co-regulate TCR and CAR signaling responses in human T cells, Cell Reports, 2023, 42(7):112663.
Jiegen Wu, Baoqiang Chen#, Yadi Liu, Liang Ma, Wen Huang,Yihan Lin*, Modulating gene regulation function by chemically controlled transcription factor clustering, Nature Communications, 2022, 13:2663.
Yan Wu#, Lingfeng Xue#, Huang Wen#, Minghua Deng, Yihan Lin*, Profiling transcription factor activity dynamics using intronic reads in time-series transcriptome data,PLOS Computational Biology, 2022, 18(1): e1009762.
Bingteng Xie, Yang Pu, Fan Yang, Wei Chen, Wei Yue, Jihong Ma, Na Zhang, Yuening Jiang, Jiegen Wu, Yihan Lin*, Xin Liang*, Chu Wang*, Peng Zou*, Mo Li*, Proteomic mapping and targeting of mitotic pericentriolar material in tumors bearing centrosome amplification, Cancer Research, 2022, 82 (14): 2576–2592.
Liang Ma, Zeyue Gao, Jiegen Wu, Bijunyao Zhong, Yuchen Xie, Wen Huang,Yihan Lin*. Co-condensation between transcription factor and coactivator p300 modulates transcriptional bursting kinetics. Molecular Cell, 2021, 81:1682-1697.
Yan Wu, Jiaqi Wu, Minghua Deng, Yihan Lin*. Yeast cell fate control by temporal redundancy modulation of transcription factor paralogs. Nature Communications, 2021, 12(1):3145.
Xu, Shuhui; Li, Kai; Ma, Liang; Zhang, Jianhan; Yoon, Shinae; Elowitz, Michael B. Lin, Yihan*，Ratiometric RNA labeling allows dynamic multiplexed analysis of gene circuits in single cells, bioRxiv
Jiegen Wu, Xu Han, Haotian Zhai, Tingyu Yang, Yihan Lin*, Evidence for rate-dependent filtering of global extrinsic noise by biochemical reactions in mammalian cells, Molecular Systems Biology, 2020, 16: e9335.
Jianhan Zhang#, Xu Han, Yihan Lin*, Dissecting the regulation and function of ATP at the single-cell level, PLOS Biology, 2018, 16(12): e3000095.
Rosa Martinez-Corral, Elba Raimundez, Yihan Lin, Michael B Elowitz, Jordi Garcia-Ojalvo*, Self-amplifying pulsatile protein dynamics without positive feedback, Cell Systems, 2018, 7(4): 453-462.
Jin Park, Marta Dies, Yihan Lin, Sahand Hormoz, Stephanie E. Smith-Unna, Sofia Quinodoz, María Jesús Hernández-Jiménez, Jordi Garcia-Ojalvo#, James C.W. Locke#, Michael B. Elowitz#, Molecular time sharing through dynamic pulsing in single cells, Cell Systems, 2018, 6(2): 216-229.
Yifat, Y, Sule, N, Lin, Y*.& Scherer, N.F., (2018). Analysis and correction of errors in nanoscale particle tracking using the Single-pixel interior filling function (SPIFF) algorithm, Scientific Reports, 7, 16553
